Package: growthcleanr 2.2.0

growthcleanr: Data Cleaner for Anthropometric Measurements

Identifies implausible anthropometric (e.g., height, weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.

Authors:Carrie Daymont [ctb, cre], Robert Grundmeier [aut], Jeffrey Miller [aut], Diego Campos [aut], Dan Chudnov [ctb], Hannah De los Santos [ctb], Lusha Cao [ctb], Steffani Silva [ctb], Hanzhe Zhang [ctb], Matt Boyas [ctb], David Freedman [ctb], Andreas Achilleos [ctb], Jessica Butts [ctb], Sheila Nguyen [ctb], Taraneh Soleymani [ctb], Max Olivier [ctb]

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growthcleanr.pdf |growthcleanr.html✨
growthcleanr/json (API)
NEWS

# Install 'growthcleanr' in R:
install.packages('growthcleanr', repos = c('https://carriedaymont.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/carriedaymont/growthcleanr/issues

Datasets:

On CRAN:

ehrehr-data

12 exports 12 stars 2.36 score 44 dependencies 1 dependents 40 scripts 334 downloads

Last updated 13 hours agofrom:f2c9601eca. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 17 2024
R-4.5-winOKSep 17 2024
R-4.5-linuxOKSep 17 2024
R-4.4-winOKSep 17 2024
R-4.4-macOKSep 17 2024
R-4.3-winOKSep 17 2024
R-4.3-macOKSep 17 2024

Exports:acf_answersadjustcarryforwardcleangrowthewmaext_bmizlongwideread_anthrorecode_sexsd_mediansimple_bmisplitinputtestacf

Dependencies:bitbit64clicliprcodetoolscpp11crayondata.tabledoParalleldplyrfansiforcatsforeachgenericsgluehavenhmsiteratorslabelledlifecyclemagrittrpillarpkgconfigplyrprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6Rcppreadrrlangstringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Answers for adjustcarryforwardacf_answers
adjustcarryforward 'adjustcarryforward' Uses absolute height velocity to identify values excluded as carried forward values for reinclusion.adjustcarryforward
BMI Anthrobmianthro
CDC BMI reference dataCDCref_d
Clean growth measurementscleangrowth
Exponentially Weighted Moving Average (EWMA)ewma
Calculate extended BMI measuresext_bmiz
Fenton Growth Curvesfentlms_foraga
Fenton Growth Curve Z-Scoresfentlms_forz
CDC Growth Percentile Tablegrowth_cdc_ext
CDC Growth Percentile Table for Infantsgrowth_cdc_ext_infants
WHO Growth Percentile Tablegrowth_who_ext
Length to Age Tablelenanthro
Transform data in growthcleanr format into wide structure for BMI calculationlongwide
NHANES reference mediansnhanes-reference-medians
Infants reference mediansrc-reference-medians
Function to calculate z-scores and csd-scores based on anthro tables.read_anthro
Recode binary sex variable for compatibilityrecode_sex
Calculate median SD score by age for each parameter.sd_median
Compute BMI using standard formulasimple_bmi
Split input data into multiple filessplitinput
syngrowthsyngrowth
Tanner Growth Velocity Tabletanner_ht_vel
Tanner Growth Velocity Table for Infantstanner_ht_vel_rev
Tanner Growth Velocity Table with (2sigma)tanner_ht_vel_with_2sd
CDC SAS BMI Outputtest_syngrowth_sas_output_compare
CDC SAS BMI Inputtest_syngrowth_wide
Function to test adjust carried forwardtestacf
Weight Anthro Tableweianthro
WHO Maximum Head Circumference Velocity for (3sigma)who_hc_maxvel
WHO Head Circumference Velocity for (3sigma)who_hc_vel_3sd
WHO Maximum Height Velocity for (3sigma)who_ht_maxvel
WHO Maximum Height Velocity for (2sigma)who_ht_maxvel_2sd
WHO Height Velocity for (2sigma)who_ht_vel_2sd
WHO Height Velocity for (3sigma)who_ht_vel_3sd