ext_bmiz() to match Dec 2022 NCHS guidelines (#98)longwide() (#71)cleangrowth() output factor now enumerateddonttest, added CRAN comments
file, updated .Rbuildignore (#84)inst/extdata for size requirements; added R.utils as
import to support fread() for .gz filesadult_cutpoint and
weightcap options (https://github.com/mitre/growthcleanr/pull/17, others)longwide(), added simple_bmi() (#47)gcdriver.R to support adult options, parallel operation
(https://github.com/mitre/growthcleanr/pull/23)syngrowth synthetic test data, now includes adults (#50)CHECK cleanly (#18, #60)Hmisc dependency (#36)clean_value result column name in docs with gcr_result for
clarity (#35)inst/extdata/nhanes-reference-medians.csv, reference medians for
recentering derived from NHANES (described in README)sd.recenter option to include new NHANES reference
medians and explicit specification with "NHANES" or "derive"
(https://github.com/mitre/growthcleanr/issues/9)README.md to be generated from README.Rmd w/knitr (thanks
@mcanouil) (#17)file.path() more consistently in R/growth.RMinor update to WHO HT velocity 3SD files to correct a small number of errors (#24). Affected files were:
inst/extdata/who_ht_maxvel_3sd.csvinst/extdata/who_ht_vel_3sd.csvAlthough these changes were very minor, it is possible that results on data cleaned after this change may vary from previous results. The prior version of these files may be obtained by visiting the tagged release version 1.2.3 at https://github.com/carriedaymont/growthcleanr/releases/tag/1.2.3.
The released version of growthcleanr available at that link contains the
older version of both files; that older version may be used to verify
reproducibility.
Alternatively, a more recent version of growthcleanr may be used with only
the affected files replaced with their older versions available at the 1.2.3
tag link above. This must be done manually.
citation("growthcleanr") works as expected@import now preferred over library() for library loadingfdir option to splitinput() to specify split file directorysyngrowth) to improve compressiontests/testthat/test-utils.R and tests/testthat/test-cdc.R to
support newly added functionslongwide(); fixed missing import in DESCRIPTIONext_bmiz(), comparable to SAS program
published at https://www.cdc.gov/nccdphp/dnpao/growthcharts/resources/sas.htminst/extdata/CDCref_d.csv from CDC for use with
ext_bmiz()longwide() for transforming cleangrowth() output for use with
ext_bmiz()recode_sex() for recoding input data column values for sex to
match cleangrowth() or ext_bmiz() requirementsexec/gcdriver.R command-line script for CLI execution of cleangrowth()Dockerfile (and .dockerignore) enabling containerized use of
growthcleanrtestsadjustcarryforward() in R/adjustcarryforward.R
and driver script exec/testadjustcf.R (see README-adjustcarryforward.md for
details)R/growth.R into separate files for clarity and easier
maintenance (all utility functions not directly used by cleangrowth() are
now in R/utils.R)error.load.mincount and error.load.thresholdlt3.exclude.mode with default (same as before) and flag.both mode for
handling unmatched pairssdmedian.filename and sdrecentered.filenamesplitinput() functionsyngrowth loads automatically.